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Rodney Kincaid

@rodneykincaid

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I integrate genomics and single-cell data into bioinformatics insights for host–virus research.

United States

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What I'm looking for

I’m looking to apply genomics and single-cell transcriptomics—paired with rigorous statistics and bioinformatics—to uncover host–virus mechanisms, collaborate across disciplines, and produce publishable, high-impact results.

I’m a molecular and computational biologist with extensive experience integrating genomics, single-cell transcriptomics, bioinformatics, and virology to investigate host–virus interactions. My work spans experimental design, statistical analysis, scientific software development, and communicating complex biological data through publications and collaborative research.

Currently, I serve as a Research Data Analyst (Fully Remote) at Oregon Health & Science University, conducting large-scale meta-analysis of Epstein-Barr Virus (EBV) in SARS-CoV-2 patient datasets. I integrate and analyze multiple in-house and publicly available scRNA-seq datasets, perform de novo viral genome assembly and annotation, mentor colleagues on genome assembly workflows, and contribute to manuscript development and review.

Earlier, as a Postdoctoral Scholar and Postdoctoral Fellow at Oregon Health & Science University and The University of Texas at Austin, I identified microRNAs regulating EBV lytic reactivation using a FACS-based genome wide CRISPR screening platform and characterized transcriptional responses at single-cell resolution. I also identified and characterized viral non-coding RNA functions—co-authoring 25+ peer-reviewed publications—and I’ve supported research through algorithm development, laboratory training, and scientific presentations.

Experience

Work history, roles, and key accomplishments

Current

Research Data Analyst

Current

Oregon Health & Science University

Jan 2025 - Present (1 year 6 months)

Performed large-scale meta-analysis of Epstein-Barr Virus (EBV) in SARS-CoV-2 patient datasets by integrating multiple single-cell RNA-seq (scRNA-seq) datasets. Conducted de novo viral genome assembly and annotation and supported scientific publication and peer review.

Meta Analysis R Python SQL SAMtools Cutadapt Star Salmon Seurat Scanpy Monocle CellRanger Hifiasm Feature Count

Postdoctoral Scholar

Oregon Health & Science University

Feb 2020 - Apr 2022 (2 years 2 months)

Developed a FACS-based genome-wide CRISPR screening platform to identify microRNAs regulating EBV lytic reactivation. Characterized transcriptional responses at single-cell resolution using scRNA-seq and contributed to publications, presentations, and manuscript review.

Flow Cytometry CRISPR Screening R Python SAMtools Cutadapt Star Salmon Seurat Scanpy Monocle CellRanger Differential Gene Expression (DESeq2 Feature Count Limma

Postdoctoral Fellow

The University of Texas at Austin

Sep 2014 - Aug 2019 (4 years 11 months)

Identified and characterized a novel host restriction factor for Hepatitis C Virus and identified the first papillomavirus microRNAs. Conducted functional and genetic analysis of viral non-coding RNAs, supported multiple publications and conference presentations, and mentored student researchers.

Viral MicroRNA Research Molecular Cloning PCR Flow Cytometry

Graduate Research Assistant

The University of Texas at Austin

Jun 2008 - Aug 2014 (6 years 2 months)

Researched discovery and function of viral microRNAs across multiple virus families and created specialized algorithms for microRNA identification. Identified and characterized new classes of viral non-coding RNAs, published extensively, and supported laboratory instruction and grading while mentoring undergraduate researchers.

Viral MicroRNA Discovery PCR Flow Cytometry Student Mentoring

Lead Software Engineer

New Phase Media/StarOne Networks

Sep 2000 - May 2005 (4 years 8 months)

Led design and implementation of a customer relationship management (CRM) system and subscription services. Also led extension and integration of a content management system and supported integration of wireless content delivery services.

System Design CRM Systems Linux Unix Git Github JavaScript SQL BASH