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Krithika UmeshKU
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Krithika Umesh

@krithikaumesh

Bioinformatician specializing in NGS, single-cell RNA‑seq, and reproducible R/Python workflows.

United States
Message

What I'm looking for

I seek collaborative research roles applying NGS and ML to genomics in interdisciplinary teams, emphasizing reproducible pipelines, data curation, and impactful biological insights.

I am a bioinformatics professional with hands-on NGS experience in bulk and single-cell RNA‑seq analysis, proficient in R, Python, and reproducible workflows on HPC. I build scalable analysis pipelines, perform differential expression, trajectory and cell–cell communication analyses, and validate methods on large high-dimensional datasets.

I collaborate across interdisciplinary teams on immunology, neurodegeneration, and space-biology projects, and apply machine learning to genomics and clinical datasets. I have curated disease datasets, constructed knowledge maps, and led ML projects for cell classification and healthcare analytics.

Experience

Work history, roles, and key accomplishments

BA
Current

Volunteer Researcher

Brain AWG

Jan 2024 - Present (2 years 2 months)

Performed preliminary bulk RNA-seq analysis of mouse cerebrum and cerebellum under microgravity, producing differential expression summaries and proposing spatial transcriptomics to probe neuroprotective pathways.

CB

Data Curator

Center for Bioinformatics and Computational Biology

Sep 2022 - Jan 2023 (4 months)

Curated AD/ADRD datasets for a deep learning text-mining system, establishing entity relationships across molecular, disease, variant, and gene levels to support downstream AI models.

Education

Degrees, certifications, and relevant coursework

University of Delaware logoUD

University of Delaware

Master of Science, Bioinformatics & Computational Biology

Activities and societies: Graduate Research Assistant, Gleghorn lab; developed single-cell RNA-seq analysis pipeline and performed pseudotime and differential expression analyses.

Master of Science in Bioinformatics & Computational Biology with research on scalable single-cell RNA-seq pipelines, data integration, and cell-type biomarker identification.

National Law School of India University (NLSIU) logoNN

National Law School of India University (NLSIU)

Postgraduate Diploma, Intellectual Property Rights

Activities and societies: Trainee experience in patent analysis and IPR-related roles.

Postgraduate diploma in Intellectual Property Rights and Law.

University of Mysore logoUM

University of Mysore

Master of Science, Bioscience

Activities and societies: Curated Alzheimer's disease datasets for text-mining and established relationships among molecular and disease entities.

Master of Science in Bioscience focusing on bioinformatics-related data curation and analysis tasks.

University of Mysore logoUM

University of Mysore

Bachelor of Science, Botany, Biochemistry, Microbiology

Bachelor-level studies in biological sciences covering botany, biochemistry, and microbiology.

Tech stack

Software and tools used professionally

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