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S DSD
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S D

@sd06

Bioinformatician at Institute of Cancer Research developing sequencing pipelines and deep learning models for cancer genomics.

United Kingdom
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At Institute of Cancer Research, I developed a Nextflow targeted amplicon sequencing pipeline for circulating tumor DNA in metastatic breast cancer. I also integrated sequencing data to investigate markers and signatures associated with chemotherapy resistance.

During my Ph.D. at University of Oslo, I analyzed RNA-seq and ChIP-seq data to study AHR signaling in a breast cancer model. I’ve also developed deep learning models for TCGA cancer data and built OncoAgent, an LLM-assisted platform for reproducible cancer genomics analyses.

Experience

Work history, roles, and key accomplishments

Institute of Cancer Research logoIR
Current

Analytical Bioinformatics Scientist

Institute of Cancer Research

Jul 2025 - Present (1 year 3 months)

Developed a circulating tumor DNA targeted amplicon sequencing pipeline using Nextflow for metastatic breast cancer patients. Integrated exome-seq and bulk RNA-seq data to derive genomic markers of therapy resistance, and processed scRNA-seq and scATAC-seq data to identify transcription factors in prostate cancer relapse.

Education

Degrees, certifications, and relevant coursework

University of Oslo logoUO

University of Oslo

Ph.D., Bioinformatics

2021 - 2025

Ph.D. in Bioinformatics with a thesis on environmental exposures and gene expression, integrating in vitro and population-based studies.

Catholic University of Leuven logoCL

Catholic University of Leuven

M.Sc., Bioinformatics

2016 - 2018

M.Sc. in Bioinformatics with a thesis on identifying bacterial taxa and metadata contributing to human enterotypes using machine learning.

Yeshiva University logoYU

Yeshiva University

Graduate Program (incomplete), Biomedical Science

2013 - 2015

Completed coursework in the Biomedical Science Graduate Program but withdrew before completing the degree.

University of Pittsburgh logoUP

University of Pittsburgh

M.Sc., Human Genetics

2010 - 2013

M.Sc. in Human Genetics with a thesis on the association of DNA repair gene variants with pancreatic cancer in chronic pancreatitis patients.

West Bengal University of Technology logoWT

West Bengal University of Technology

B.Tech., Biotechnology

2005 - 2009

B.Tech. in Biotechnology.

Tech stack

Software and tools used professionally

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