Ghulam Muhammed Khan

GK

Looking for a job

Ghulam Muhammed Khan

@ghulammuhammedkhan

Bioinformatician at NHS / University of Oxford who automated genomic workflows and developed a modular pipeline for outbreak analysis.

At NHS / University of Oxford, I automated bioinformatics workflows for basecalling, quality control, alignment, and variant detection using Python, R, and Bash. I also developed software applications using AWS, Docker, and Node.js for project requirements.

As a Research Affiliate at University of the Western Cape, I developed a custom Python pipeline for genomic data and worked with ontologies using OWL, RDF, and Protégé. My projects include a modular Nextflow pipeline for outbreak genomic analysis and an NLP pipeline for biological text analysis.

Experience

Work history, roles, and key accomplishments

UC

Research Affiliate

University of the Western Cape

Sep 2024 - Aug 2025 (11 months)

Developed custom bioinformatics pipelines and applications for clients using Python, R, Bash, and Node.js. Managed ontologies with OWL and RDF, and advanced skills in ontology, HTML, Node.js, and Java.

Python R BASH NodeJS Biopython Pandas OWL Resource Description Framework (RDF)Protégé HTML Java

NO

Bioinformatician

NHS / University of Oxford

May 2022 - May 2024 (2 years)

Developed and automated bioinformatics workflows using Python, R, and Bash, and built scalable applications with AWS, Docker, and Node.js. Collaborated with cross-functional teams and managed Linux-based databases with optimized SQL queries.

Python R BASH AWS Docker GitHub NodeJS SQL Power BI Tableau Pandas NumPy Matplotlib SeaBorn Linux Agile

Education

Degrees, certifications, and relevant coursework

UE

University of Exeter

Doctor of Philosophy, AI and Machine Learning for Electronic Health Records

2025 -

PhD in AI and Machine Learning for Electronic Health Records, developing NLP pipelines to analyse unstructured EHR data for diabetes patients.

BL

Birkbeck, University of London

Master of Science (Hons), Bioinformatics

2022 - 2024

Grade: Distinction

MSc (Hons) Bioinformatics with Distinction. Thesis on the effect of read length and nanopore base calling quality on metagenomic classifier results.

UR

University of Reading

Bachelor of Science (Hons), Biomedical Science

2019 - 2022

Grade: 2:1

BSc (Hons) Biomedical Science with a 2:1 grade. Final year dissertation on the effects of diet on gut microbiota and neurological diseases.

Tech stack

Software and tools used professionally

Availability

Looking for a job

Location

Ireland

Authorized to work in

United Arab Emirates

Salary expectations

20k+ GBP

Social media

Job categories

Bioinformatician Computational Biologist Machine Learning Engineer

Skills

Bioinformatics NGS Data Analysis Genomics Data Analysis Pipeline Development Nextflow Python R BASH NLP AWS Docker SQL Biopython Semantic Web OWL

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