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Aly DhedhiAD
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Aly Dhedhi

@alydhedhi

I build machine learning and computational biology systems for clinical AI, genomics, and drug-resistance discovery.

United States
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What I'm looking for

I'm looking to contribute to biomedical research and AI in healthcare, especially work involving clinical phenotyping, oncology, computational biology, and reproducible machine-learning systems.

I'm developing an interpretable VQ-VAE for single-cell RNA-seq batch correction at Tsinghua University, evaluating it across 161,000-cell and million-cell cohorts for biological conservation and out-of-distribution robustness.

In the Kellis Lab, I built an XGBoost pipeline that forecasts unobserved drug-resistant M. tuberculosis mutations with 0.971 AUROC, integrating homoplasy, AlphaFold structural features, and drug-pocket coordinates across 44,016 variants.

At MIT CSAIL, I ship full-stack features for a 3D high-dimensional data platform using Django, Three.js, WebSockets, and Celery. I've delivered 26 merged PRs and 400+ commits, including a 2.5D map engine, semantic search, dataset-ingestion infrastructure, and security improvements.

I've also co-authored clinical AI failure-analysis research and led computational peptide design for BBB-penetrant EGFRvIII targeting. I bring scientific writing, reproducible pipelines, and a practical interest in using AI to advance biomedical research and patient care.

Experience

Work history, roles, and key accomplishments

KL
Current

Emergence Forecasting Model for Protein Hotspots

Kellis Lab

May 2026 - Present (5 months)

Built a predictive machine learning pipeline using XGBoost to forecast drug-resistant mutations in M. tuberculosis with a 0.971 AUROC. Integrated population homoplasy data with AlphaFold structural features and validated against 12,287 clinical isolates.

TT
Current

Student Fundraiser and Volunteer

The Citizens Foundation (TCF)

Jul 2022 - Present (4 years 3 months)

Raised over $23,000 to support underprivileged children's education, equivalent to a year's education for 166 children. Invited to speak at national fundraising events and recognized as top fundraiser for the youth cohort twice.

BT
Current

Troop Guide / Assistant Senior Patrol Leader

Boy Scouts of America, Troop 813

Aug 2021 - Present (5 years 2 months)

Led patrols, organized community service projects, and mentored younger scouts in leadership and civic responsibility. Current Life Scout with Eagle Scout expected by mid 2027.

CO

Research Co-Author / Contributor

Collaborative

Jul 2026 - Aug 2026 (1 month)

Co-authored a framework for per-modality failure analysis in multimodal clinical AI, engineering a reusable evaluation harness with mask-aware probes. Validated the framework on frozen EchoJEPA and HuBERT-ECG embeddings over a MIMIC-IV cohort.

HB

Gastroenterologist Assistant / Clinical Shadowing Student

HCA Florida – West Palm Beach

Jul 2025 - Aug 2025 (1 month)

Assisted a gastroenterologist in patient consultations, observing diagnostic workflows and treatment planning. Gained hands-on exposure to clinical procedures including endoscopic techniques and biopsy collection.

Education

Degrees, certifications, and relevant coursework

AC

American Heritage Schools - Broward Campus

High School Diploma, Premed Program

2026 -

Grade: Weighted GPA ~ 4.63/4.0, Unweighted GPA ~ 4.0/4.0

Activities and societies: HOSA, Pre-Med Society, USABO, Mu Alpha Theta

Pursuing a High School Diploma in the Premed Program with a weighted GPA of approximately 4.63/4.0 and unweighted GPA of 4.0/4.0.

JC

Jumeirah College

High School Diploma, General Studies

2024 - 2026

Grade: Weighted GPA ~ 3.9/4.0, Unweighted GPA ~ 3.8/4.0; GCSE: 3 A**, 5 A*, 1 B+

Activities and societies: MUN, WSC, JC Econ magazine; Founder of Mu Alpha Theta’s JC chapter; Captain of JC Rugby Squad (2024-25)

Completed a High School Diploma with a weighted GPA of approximately 3.9/4.0 and unweighted GPA of 3.8/4.0, achieving strong GCSE scores.

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