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BenchSciBE

Senior Machine learning Engineer (GraphRAG)

We’re resolving the complexity of disease biology to help advance your science.

BenchSci

Employee count: 51-200

United Kingdom only

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We are looking for a Senior Machine learning Engineer (GraphRAG & Retrieval Tools) to join our Knowledge Graph Retrieval team.
You will help design and build robust, reusable retrieval tools and services that empower consumer teams to leverage our large-scale Knowledge Graph. You will be building the core platform that powers sophisticated Graph-based Retrieval-Augmented Generation (GraphRAG) and automated querying applications. You will work alongside some of the brightest minds in tech, enabling state-of-the-art approaches to data retrieval and reasoning. Your work is at the core of this challenge, ensuring our internal teams can easily and effectively build applications on top of our graph data.
Your primary focus will be to build tools that abstract the complexity of graph traversal and retrieval. This includes developing sophisticated models for automated querying, creating high-performance retrieval services, and building developer-friendly APIs and libraries.
You are comfortable working in a team that pushes the boundaries of what is possible with cutting-edge ML/AI, challenges the status quo, and is laser-focused on value delivery in a fail-fast environment.

You Will:

  • Design, build, and maintain scalable retrieval tools and services (APIs, libraries) for internal consumer teams, focusing on our Knowledge Graph.
  • Develop and optimize automated querying systems, including Text-to-Query models (e.g., Text-to-Cypher), to translate natural language questions into efficient graph queries, developing Cypher templates and query stitching.
  • Partner with consumer teams to understand their needs, provide high-quality and well-documented tools, and drive the adoption of your retrieval platform.
  • Own the end-to-end lifecycle of the ML models that power these tools, from data preparation and training to deployment, monitoring, and iteration.
  • Collaborate cross-functionally with data engineers, ML engineers, and product managers to build a cohesive and powerful retrieval ecosystem.

You Have:

  • Minimum 3, ideally 5+ years of experience as an ML engineer or data scientist with a proven track record of delivering complex ML projects.
  • A strong platform-building mindset: Experience building and maintaining ML-powered tools, APIs, or platforms for other developers or internal teams.
  • Deep, hands-on experience with Graph Data Science (GNNs, link prediction) and Knowledge Graphs (e.g., Neo4j, Neptune) using query languages like Cypher.
  • Strong, demonstrable experience with LLMs and RAG pipelines, with a specific focus or passion for query generation and retrieval optimization.
  • Mastery of the Python data science and ML ecosystem (Pandas, PyTorch, scikit-learn) and experience with the full ML development lifecycle. Experience deploying services (e.g., FastAPI, Docker) is a plus.
  • Degree (preferably PhD or Masters) in Computer Science, Data Science, or a related field.
  • Excellent communication and collaboration skills, with a customer-centric mindset for understanding and supporting your internal "consumer teams".

Benefits and Perks:

* A great compensation package that includes BenchSci equity options
* A robust vacation policy plus an additional vacation day every year
* Company closures for 14 more days throughout the year
* Flex time for sick days, personal days, and religious holidays
* Comprehensive health and dental benefits
* Annual learning & development budget
* A one-time home office set-up budget to use upon joining BenchSci
* An annual lifestyle spending account allowance
* Generous parental leave benefits with a top-up plan or paid time off options
* The ability to save for your retirement coupled with a company match!

About BenchSci:

BenchSci's mission is to exponentially increase the speed and quality of life-saving research and development. We empower scientists to run more successful experiments with the world's most advanced, biomedical artificial intelligence software platform.
Backed by Generation Investment Management, TCV, Inovia, F-Prime, Golden Ventures, and Google's AI fund, Gradient Ventures, we provide an indispensable tool for scientists that accelerates research at top pharmaceutical companies and leading academic centers.

Our Culture:

Our culture fosters transparency, collaboration, and continuous learning.
We value each other's differences and always look for opportunities to embed equity into the fabric of our work. We foster diversity, autonomy, and personal growth, and provide resources to support motivated self-leaders in continuous improvement.
You will work with high-impact, highly skilled, and intelligent experts motivated to drive impact and fulfill a meaningful mission. We empower you to unleash your full potential, do your best work, and thrive. Here you will be challenged to stretch yourself to achieve the seemingly impossible.
Diversity, Equity and Inclusion: We're committed to creating an inclusive environment where people from all backgrounds can thrive. We believe that improving diversity, equity and inclusion is our collective responsibility, and this belief guides our DEI journey. Learn more about our DEI initiatives.
Accessibility Accommodations: Should you require any accommodation, we will work with you to meet your needs. Please reach out to talent@benchsci.com.

About the job

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Job type

Full Time

Experience level

Senior

Location requirements

Hiring timezones

United Kingdom +/- 0 hours

About BenchSci

Learn more about BenchSci and their company culture.

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We’re resolving the complexity of disease biology to help advance your science.

Using AI and proprietary visual machine learning, we’ve built the world’s first evidence-backed map of disease biology. Because we believe that when scientists understand what has already been done, they can understand the feasibility of what is yet to be discovered.

We taught a computer to read and understand experiments like a biologist

Our founders Tom Leung, David Q. Chen, Elvis Wianda, and Liran Belenzon met at the U of T Creative Destruction Lab in 2015. Together they built, tested, and validated an AI solution to the antibody reproducibility crisis. This captured the attention of Google’s AI fund Gradient Ventures, who led BenchSci’s A-round and raised $10M to develop the technology and the business.

Then built an enterprise AI solution to antibody selection

In 2017, BenchSci launched its first application, AI-Assisted Antibody Selection, to help scientists reduce experimental failure. The solution used both experiment-specific text ML and proprietary vision ML models that could understand the type of experiment being conducted. Next, our team then built relationships between those data points with proprietary bioinformatics ontologies. Best of all, we made these results searchable in an intuitive user interface.

Now we power research at the world’s biggest institutions

Within three years, more than 4,300 leading academic research institutions and 16 of the top 20 pharma companies were using our AI solutions. More than 50,000 scientists began relying on BenchSci to support their experiment decisions.

Project Butterfly—The world’s first evidence-backed map of disease biology

What scientists discovered was that BenchSci and our visual ML had built the first objective map of the underlying biology of disease. So, working in secret with top partners and global pharma R&D leaders, we launched Project Butterfly—an attempt to use this transformative technology to solve the biggest challenges in pre-clinical research. iNovia and TCV supported this initiative with a $50M Series C round.

Our next step: ASCEND

The portfolio success platform developed during Project Butterfly was given the name ASCEND, as it is designed to take the discovery and development of medicine to new heights. It augments scientists by giving them an unmatched understanding of disease biology in a platform that democratizes that understanding in all therapeutic areas. With ASCEND, our aim is to increase the speed and yield of the R&D portfolio by multiples, not percentages.

Series D Funding

BenchSci announces the completion of its Series D funding round led by Generation Investment Management. The significant investment enables BenchSci to further enhance the AI-powered platform ASCEND, expand offerings, and continue to empower scientists with the tools they need to accelerate drug discovery and improve patient outcomes.

Employee benefits

Learn about the employee benefits and perks provided at BenchSci.

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Home Office Budget

BenchSci supports remote work with a $1000 CAD budget for employees to set up their home office.

Learning & Development

BenchSci invests in its employees' growth with a $2000 CAD annual budget for learning and development.

Unlimited Flex Time

Employees at BenchSci enjoy unlimited flex time, sick days, personal days, and time off for religious holidays.

Parental Leave Top-Up

BenchSci offers generous parental leave benefits with a top-up plan and paid time options to support new parents.

View BenchSci's employee benefits
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BenchSci

Company size

51-200 employees

Founded in

2015

Chief executive officer

Liran Belenzon

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