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Geoffrey OmondiGO
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Geoffrey Omondi

@geoffreyomondi1

I build reproducible genomics and phylogenetics analyses for infectious disease research.

Kenya
Message

What I'm looking for

I'm looking to apply computational biology, genomics, phylogenetics, and molecular research experience to innovative infectious disease and global health research.

I'm leading a computational biology investigation at the Kenya Institute of Primate Research into why Trypanosoma equiperdum retains mitochondrial DNA while closely related parasites can thrive without it. I build reproducible R, Snakemake, and Docker pipelines for comparative genomics, phylogenetics, transcriptomics, molecular evolution, and RNA-seq analysis.

My foundation spans tropical medicine research at the Institute of Tropical Medicine Antwerp, public health research with CIHEB and the University of Maryland Baltimore, and molecular diagnostics at Migori County Referral Hospital. With a Master's in Infectious and Tropical Diseases from the University of Antwerp, I bring bench experience in cell culture, microscopy, PCR, quality control, and sample preparation to computational work in global health.

Experience

Work history, roles, and key accomplishments

KR
Current

Research Volunteer

Kenya Institute of Primate Research

Mar 2026 - Present (7 months)

Leading a computational biology investigation into a critical evolutionary question: why does Trypanosoma equiperdum cling to mitochondrial DNA when closely related parasites (T. evansi) thrive without it? Understanding this paradox has implications for parasitology and organellar genome evolution. Building the Research Framework Developing an integrated analytical approach combining comparative g

AA

Warehouse Orderpicker

AS Adventure

Jul 2025 - Oct 2025 (3 months)

Worked as part of the logistics and warehouse operations team in a high-throughput retail environment. Responsibilities included receiving and inspecting incoming goods, order picking and packing, inventory handling, and preparing shipments for store distribution. Operated warehouse equipment safely while adhering to internal procedures for stock accuracy, traceability, and workplace safety. Colla

AS

Warehouse Associate

Amazon DBG2 Delivery Station

Nov 2024 - May 2025 (6 months)

I support daily logistics operations by unpacking, sorting, scanning, and conducting quality checks on packages. I work in a fast-paced, SOP-driven environment where I prioritize safety, accuracy, and workflow efficiency. This role continuously sharpens my attention to detail, adaptability, and ability to maintain high standards under pressure, qualities that complement my background in scientific

IA

Research Intern

Institute of Tropical Medicine Antwerp

Jan 2024 - Jun 2024 (5 months)

Applied foundational skills in cell culture, microscopy, and molecular assays to support tropical medicine research. Contributed to experimental workflows by designing protocols, executing assays, and generating quality data under supervision. Translated theoretical knowledge into practical laboratory experience in infectious disease research.

CC

Research Assistant

Center for International Health, Education, and Biosecurity (CIHEB)

May 2021 - Jul 2021 (2 months)

Data handling, analysis, and reporting in evidence-based public health research setting.

MH

Medical Laboratory Technician

Migori County Referral Hospital

Nov 2019 - Dec 2020 (1 year 1 month)

Receive and process patient samples, preparing necessary media and reagent preparations for analysis. Perform GeneXpert MTB/RIF testing for new tuberculosis-suspected patients and prepare Acid-Fast Bacillus (AFB) staining for follow-up cases. Document all patient results comprehensively and assist with laboratory organization, including supply inventory management, equipment cleaning, and maintena

KR

Research Intern

Kenya Institute of Primate Research

Apr 2017 - Aug 2017 (4 months)

DNA/RNA extraction, PCR/qPCR, microscopy, assay quality control, and sample preparation.

Education

Degrees, certifications, and relevant coursework

UA

University of Antwerp

Master of Biomedical Sciences, Infectious and Tropical Diseases

2021 - 2024

UE

University of Eldoret

Bachelor's degree, Biotechnology and Biosafety

2014 - 2019

Tech stack

Software and tools used professionally

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