
Geoffrey Omondi
@geoffreyomondi1
I build reproducible genomics and phylogenetics analyses for infectious disease research.
What I'm looking for
I'm leading a computational biology investigation at the Kenya Institute of Primate Research into why Trypanosoma equiperdum retains mitochondrial DNA while closely related parasites can thrive without it. I build reproducible R, Snakemake, and Docker pipelines for comparative genomics, phylogenetics, transcriptomics, molecular evolution, and RNA-seq analysis.
My foundation spans tropical medicine research at the Institute of Tropical Medicine Antwerp, public health research with CIHEB and the University of Maryland Baltimore, and molecular diagnostics at Migori County Referral Hospital. With a Master's in Infectious and Tropical Diseases from the University of Antwerp, I bring bench experience in cell culture, microscopy, PCR, quality control, and sample preparation to computational work in global health.
Experience
Work history, roles, and key accomplishments
Leading a computational biology investigation into a critical evolutionary question: why does Trypanosoma equiperdum cling to mitochondrial DNA when closely related parasites (T. evansi) thrive without it? Understanding this paradox has implications for parasitology and organellar genome evolution. Building the Research Framework Developing an integrated analytical approach combining comparative g
Worked as part of the logistics and warehouse operations team in a high-throughput retail environment. Responsibilities included receiving and inspecting incoming goods, order picking and packing, inventory handling, and preparing shipments for store distribution. Operated warehouse equipment safely while adhering to internal procedures for stock accuracy, traceability, and workplace safety. Colla
I support daily logistics operations by unpacking, sorting, scanning, and conducting quality checks on packages. I work in a fast-paced, SOP-driven environment where I prioritize safety, accuracy, and workflow efficiency. This role continuously sharpens my attention to detail, adaptability, and ability to maintain high standards under pressure, qualities that complement my background in scientific
Applied foundational skills in cell culture, microscopy, and molecular assays to support tropical medicine research. Contributed to experimental workflows by designing protocols, executing assays, and generating quality data under supervision. Translated theoretical knowledge into practical laboratory experience in infectious disease research.
Research Study Assistant
University of Maryland Baltimore and Maryland Global Initiat
Jun 2021 - Jul 2021 (1 month)
Conducted a baseline survey on the effects of COVID-19 on health services delivery, focusing on fever-related and ANC services for mothers of reproductive age.
Research Study Assistant
Jun 2021 - Jul 2021 (1 month)
Conducting a baseline survey for the effects of COVID-19 on health services (fever-related and ANC services) delivery with a significant focus on mothers of reproductive age (18-45 years).
Research Assistant
May 2021 - Jul 2021 (2 months)
Data handling, analysis, and reporting in evidence-based public health research setting.
Receive and process patient samples, preparing necessary media and reagent preparations for analysis. Perform GeneXpert MTB/RIF testing for new tuberculosis-suspected patients and prepare Acid-Fast Bacillus (AFB) staining for follow-up cases. Document all patient results comprehensively and assist with laboratory organization, including supply inventory management, equipment cleaning, and maintena
DNA/RNA extraction, PCR/qPCR, microscopy, assay quality control, and sample preparation.
Education
Degrees, certifications, and relevant coursework
University of Antwerp
Master of Biomedical Sciences, Infectious and Tropical Diseases
2021 - 2024
University of Eldoret
Bachelor's degree, Biotechnology and Biosafety
2014 - 2019
Availability
Location
Authorized to work in
Salary expectations
Job categories
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