Open to opportunities

Emi Fayman

@emifayman

Message

I build scalable bioinformatics pipelines for interactome-scale protein interaction prediction.

Israel

Message

What I'm looking for

I'm seeking an industry role where I can apply data-driven and computational approaches to complex real-world challenges.

I've built an AlphaFold3-based pipeline for more than 1 million protein-protein interactions at Tel Aviv University, reducing computational complexity from O(n²) to O(n) and cutting CPU usage by approximately 70%.

I combine structural bioinformatics, statistical modeling, and HPC optimization to turn biological questions into scalable computational screens. My work integrates FoldX, PISA, pDockQ2, LIS, and ipSAE into consensus scoring frameworks, with R-based GLM classification, hypothesis testing, FDR correction, and ROC-AUC evaluation.

I've also translated research requirements into prioritized candidates for another lab, managed large parallel workloads with SLURM and Singularity, and accelerated development with Claude Code and GitHub Copilot. My background includes RNA targeting, protein modulation, wet-lab biology, and academic training in theoretical mathematical biology.

Experience

Work history, roles, and key accomplishments

Graduate Researcher

Tel Aviv University

Jan 2024 - Dec 2026 (2 years 11 months)

Built a scalable AlphaFold3-based pipeline for over 1M protein-protein interactions, reducing CPU usage by ~70% through an MSA/template reuse strategy. Developed consensus scoring frameworks and R-based GLM models, and managed thousands of parallel jobs on Linux clusters.