Agustín Bertone
@agustnbertone
I build end-to-end metagenomics pipelines to characterize environmental microbial communities.
What I'm looking for
At INGEBI–CONICET, I independently designed and executed an end-to-end metagenomics pipeline for 20 environmental samples, from raw sequencing data through functional and taxonomic annotation.
I use MEGAHIT, MetaBAT2, CheckM, Bowtie2, Anvi'o, and Kraken2 to generate high-quality bacterial genome bins and investigate microbial communities’ metabolic potential. My undergraduate thesis and a manuscript in preparation build on this work, where I will be a co-author.
At UNSAM’s Institute for Biotechnological Research, I combined computational work with microbial cultivation, strain handling, protein extraction and purification, and SDS-PAGE. I systematically tested experimental variables and validated protocol changes against concrete evidence.
I'm completing a Biotechnology degree and work comfortably in independent, asynchronous, remote-first environments. I bring rigorous quality criteria, reproducible workflows, and clear communication of technical findings to broad audiences.
Experience
Work history, roles, and key accomplishments
Research Intern - Bioinformatics
INGBIE - CONICET
Jan 2024 - Present (2 years 7 months)
Independently designed and executed a full metagenomics bioinformatics pipeline, processing 20 environmental samples and generating 10-50 high-quality bacterial genome bins per sample. Characterized functional metabolic potential of bacterial communities and communicated findings to non-specialist audiences.
Research Intern - Microbiology & Protein Biochemistry
Institute for Biotechnological Research (IIB) - UNSAM
Aug 2024 - Dec 2024 (4 months)
Selected through a competitive university research grant. Conducted microbial cultivation, strain handling, protein extraction and purification, and verification via SDS-PAGE. Systematically tested experimental variables to optimize protocol efficiency.
Education
Degrees, certifications, and relevant coursework
Universidad Nacional de San Martín
Bachelor's Degree, Biotechnology
Grade: 8.07/10
Activities and societies: Elected student representative, School of Biotechnology & Nanotechnology (UNSAM).
Pursuing a Bachelor's Degree in Biotechnology with a GPA of 8.07/10, currently in the final stage of coursework and thesis.
Availability
Location
Authorized to work in
Job categories
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