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Bogdan KiriukhinBK
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Bogdan Kiriukhin

@bogdankiriukhin

Computational biologist at AquaBioSafe Laboratory building open-source cell-counting software used in an international algal-bloom monitoring project.

Kazakhstan
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At AquaBioSafe Laboratory, I built an open-source computer-vision cell counter for an international harmful-algal-bloom monitoring project. It reduced sample counting from hours to minutes with almost no manual work, reaching 5.3% mean count error on 12 annotated test images.

I also developed a local RAG assistant for protist identification. It searches about 110 papers, cites supporting quotes for candidate taxa, and returns “insufficient evidence” when retrieval is weak.

Across three Russian Science Foundation projects and a World-Class Research Center program, I’ve worked on metabarcoding, metagenomics, genome and transcriptome assembly, differential expression, and phylogenetics. I also administer the lab’s Linux GPU server, which holds more than 50 TB of data.

At Polyus R&D Center, I built Random Forest and logistic regression models to forecast gold recovery, helping move the team from descriptive reporting to prediction. My work cut weekly sample-analysis time by 15% and monthly reporting by four hours.

Experience

Work history, roles, and key accomplishments

Okinawa Institute of Science and Technology (OIST) logoOO

Visiting Researcher

Okinawa Institute of Science and Technology (OIST)

Apr 2023 - Oct 2023 (6 months)

Prototyped a CNN-based metagenomic binner and benchmarked network architectures and DNA-sequence feature representations. Designed metabarcoding, metagenomic, and proteomic pipelines in the Husnik lab.

BC

Research Engineer

Biotechnology Lab, Polyus R&D Center

Oct 2018 - Jun 2020 (1 year 8 months)

Built Random Forest and logistic regression models to forecast gold recovery, moving the team from descriptive reporting to prediction. Reduced weekly sample-analysis time by 15% and monthly reporting by 4 hours.

Education

Degrees, certifications, and relevant coursework

University of Tyumen logoUT

University of Tyumen

PhD (Candidate of Sciences), Biology

PhD (Candidate of Sciences) in Biology, defended at the Papanin Institute for Biology of Inland Waters, RAS.

Siberian Federal University logoSU

Siberian Federal University

Master of Science, Genomics and Bioinformatics

MSc in Genomics and Bioinformatics.

Siberian Federal University logoSU

Siberian Federal University

Bachelor of Science, Bioengineering, Biotechnology and Bioinformatics

BSc in Bioengineering, Biotechnology and Bioinformatics.

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