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Belay GebregergisBG
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Belay Gebregergis

@belaygebregergis

I build reproducible machine learning pipelines for biomedical discovery and biomarker validation.

Canada
Message

What I'm looking for

I'm looking to apply machine learning, statistical analysis, and reproducible data pipelines to complex biomedical or health-related datasets, owning projects end to end while collaborating with distributed, cross-functional teams.

At the TANZ Centre for Research in Neurodegenerative Diseases at the University of Toronto, I apply large language models and graph neural networks to structural and multi-omics datasets to identify therapeutic targets and disease-relevant patterns.

I've built reproducible Python, R, SQL, and MATLAB pipelines for large longitudinal biomedical datasets and developed a pre-registered, multi-cohort biomarker validation framework adapted from FDA-NIH BEST principles. My work defines rigorous quality thresholds to test whether findings generalize across independent patient cohorts.

My background spans neurodegeneration, electrophysiology, synaptic biology, pharmacology, and toxicology, including research roles in Canada, Germany, France, and Ethiopia. I communicate complex findings through publications, grants, and scientific presentations while owning multi-stage projects from design through dissemination.

Experience

Work history, roles, and key accomplishments

University of Toronto logoUT
Current

Postdoctoral Fellow

University of Toronto

Mar 2026 - Present (6 months)

Apply large language models and graph neural networks to structural and multi-omics biomedical datasets to identify novel therapeutic targets and disease-relevant patterns. Designed and open-sourced a machine learning evaluation toolkit assessing the reliability of EEG-derived biomarkers, defining precise quality and acceptance criteria for measures intended to generalize across independent patien

Education

Degrees, certifications, and relevant coursework

University of Toronto logoUT

University of Toronto

Doctor of Philosophy, Laboratory Medicine and Pathobiology

2019 - 2026

PhD in Laboratory Medicine and Pathobiology, focusing on hippocampal hyperexcitability and synaptic mechanisms in C9orf72-related neurodegeneration.

Charité Universitätsmedizin Berlin logoCB

Charité Universitätsmedizin Berlin

Master of Science, Neuroscience

2017 - 2019

M.Sc. in Neuroscience as part of the Erasmus Mundus Programme, with studies at Charité Universitätsmedizin Berlin and University of Bordeaux.

University of Bordeaux logoUB

University of Bordeaux

Master of Science, Neuroscience

2017 - 2019

M.Sc. in Neuroscience as part of the Erasmus Mundus Programme, with studies at Charité Universitätsmedizin Berlin and University of Bordeaux.

Addis Ababa University logoAU

Addis Ababa University

Master of Science, Pharmacology

M.Sc. in Pharmacology from Addis Ababa University.

University of Gondar logoUG

University of Gondar

Bachelor of Pharmacy, Pharmacy

B.Pharm from the University of Gondar.

Tech stack

Software and tools used professionally

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