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Thomas Martin-Lilley

@thomasmartin-lilley

PhD researcher at King's College London developing Ciona intestinalis to investigate gut microbiome assembly.

United Kingdom
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At King's College London and FSC Millport, I developed Ciona intestinalis as an experimental model for studying microbiota development, environmental variation and antimicrobial challenges. I optimised IVF and aquatic husbandry protocols to rear animals from fertilisation to adulthood.

I established germ-free juvenile culture experiments to investigate microbiota colonisation under different microbial exposure and feeding conditions. My work includes DNA and RNA extraction, PCR, RT-qPCR, and analysis of short- and long-read 16S rRNA sequencing data using R.

At Imperial College London, I conducted bacterial growth assays using Hamilton liquid-handling automation and contributed to Illumina 16S sequencing workflows. I’ve also supported teaching in R, Python and sequence analysis, and presented my research at conferences.

Experience

Work history, roles, and key accomplishments

IL

MRes Laboratory Research

Imperial College London

Jan 2019 - Jan 2022 (3 years)

Performed fluorometric enzyme assays, luciferase-based ATP assays, MicroResp CO2 respiration assays, Biolog physiological profiling and flow cytometry. Designed and analyzed replicated comparisons of microbial cryopreservation methods and analyzed 16S data for faecal microbiota transplant research.

Education

Degrees, certifications, and relevant coursework

KL

King's College London

PhD, Microbiology

2022 -

PhD Microbiology with thesis on establishing Ciona intestinalis as a model organism for gut microbiome research. Submission expected 30 November 2026.

Imperial College London logoIL

Imperial College London

MRes, Ecology, Evolution & Conservation

2019 - 2022

Grade: Distinction

MRes Ecology, Evolution & Conservation with Distinction.

University of Lincoln logoUL

University of Lincoln

BSc (Hons), Biochemistry

2015 - 2018

Grade: 2:1

BSc (Hons) Biochemistry with 2:1 classification.

Tech stack

Software and tools used professionally

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